Index A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | Q | R | S | T | U | V | W A accelerator (neuralbench.utils.TrainerConfig attribute) accumulate_grad_batches (neuralbench.utils.TrainerConfig attribute) act_first (neuraltrain.models.fmri_mlp.FmriMlp attribute) activation_layer (neuraltrain.models.common.Mlp attribute) add_cls_token (neuraltrain.models.conv_transformer.ConvTransformer attribute) aggregation (neuralbench.modules.DownstreamWrapper attribute) (neuralset.extractors.base.BaseExtractor attribute) (neuralset.extractors.base.EventDetector attribute) (neuralset.extractors.meta.ToStatic attribute) (neuralset.extractors.neuro.HrfConvolve attribute) aliases (neuralset.events.study.Study attribute) alibi_pos_bias (neuraltrain.models.transformer.TransformerEncoder attribute) allow_maxshield (neuralset.extractors.neuro.MneRaw attribute) allow_missing (neuralset.extractors.base.BaseExtractor attribute) (neuralset.extractors.base.EventDetector attribute) anonymous (neuraltrain.utils.WandbLoggerConfig attribute) apply() (neuralset.dataloader.Segmenter method) apply_hilbert (neuralset.extractors.neuro.MneRaw attribute) apply_proj (neuralset.extractors.neuro.MneRaw attribute) apply_tddr (neuralset.extractors.neuro.FnirsExtractor attribute) as_one_batch() (neuralset.dataloader.SegmentDataset method) attn_dropout (neuraltrain.models.transformer.TransformerEncoder attribute) attn_flash (neuraltrain.models.transformer.TransformerEncoder attribute) average_channels (neuralset.extractors.image.RFFT2D attribute) average_subjects (neuraltrain.models.common.SubjectLayers attribute) B backbone_out_channels (neuraltrain.models.simpleconv.SimpleConv attribute) BahdanauAttention (class in neuraltrain.models.common) BandstopFilterFFT (class in neuraltrain.augmentations.augmentations) bandwidth (neuraltrain.augmentations.augmentations.BandstopFilterFFTConfig attribute) baseline (neuralset.extractors.neuro.MneRaw attribute) (neuralset.extractors.neuro.SpikesExtractor attribute) Batch (class in neuralset.dataloader) batch_norm (neuraltrain.models.simpleconv.SimpleConv attribute) batch_size (neuralbench.main.Data attribute) (neuralset.extractors.text.HuggingFaceText attribute) bi_out (neuraltrain.models.green.Green attribute) bias (neuraltrain.models.common.Mlp attribute) (neuraltrain.models.common.SubjectLayers attribute) bibtex (neuralset.events.study.Study attribute) bipolar_ref (neuralset.extractors.neuro.MneRaw attribute) brain_model_config (neuralbench.main.Experiment attribute) brain_model_name (neuralbench.main.Experiment attribute) brain_model_output_size (neuralbench.main.Experiment attribute) BrainModule (class in neuralbench.pl_module) bucket (neuralfetch.download.Physionet attribute) build() (neuralbench.modules.DownstreamWrapper method) (neuralbench.utils.TrainerConfig method) (neuralset.events.study.Study method) (neuralset.extractors.neuro.ChannelPositions method) (neuraltrain.augmentations.augmentations.BandstopFilterFFTConfig method) (neuraltrain.augmentations.augmentations.ChannelsDropoutConfig method) (neuraltrain.augmentations.augmentations.FrequencyShiftConfig method) (neuraltrain.augmentations.augmentations.GaussianNoiseConfig method) (neuraltrain.augmentations.augmentations.SmoothTimeMaskConfig method) (neuraltrain.augmentations.augmentations.TrivialBrainAugmentConfig method) (neuraltrain.losses.base.BaseLoss method) (neuraltrain.losses.base.BaseTorchLoss method) (neuraltrain.metrics.base.BaseMetric method) (neuraltrain.metrics.base.BaseTorchMetric method) (neuraltrain.models.base.BaseBrainDecodeModel method) (neuraltrain.models.base.BaseModelConfig method) (neuraltrain.models.common.ChannelMerger method) (neuraltrain.models.common.FourierEmb method) (neuraltrain.models.common.Mlp method) (neuraltrain.models.common.SubjectLayers method) (neuraltrain.models.common.TemporalDownsampling method) (neuraltrain.models.conformer.Conformer method) (neuraltrain.models.conv_transformer.ConvTransformer method) (neuraltrain.models.diffusion_prior.DiffusionPrior method) (neuraltrain.models.dummy_predictor.DummyPredictor method) (neuraltrain.models.fmri_mlp.FmriLinear method) (neuraltrain.models.fmri_mlp.FmriMlp method) (neuraltrain.models.freqbandnet.FreqBandNet method) (neuraltrain.models.green.Green method) (neuraltrain.models.labram.NtLabram method) (neuraltrain.models.linear.Linear method) (neuraltrain.models.luna.NtLuna method) (neuraltrain.models.preprocessor.OnTheFlyPreprocessor method) (neuraltrain.models.reve.NtReve method) (neuraltrain.models.simpleconv.SimpleConv method) (neuraltrain.models.simpleconv.SimpleConvTimeAgg method) (neuraltrain.models.simplerconv.SimplerConv method) (neuraltrain.models.transformer.TransformerEncoder method) (neuraltrain.optimizers.base.BaseLRScheduler method) (neuraltrain.optimizers.base.BaseOptimizer method) (neuraltrain.optimizers.base.BaseTorchLRScheduler method) (neuraltrain.optimizers.base.BaseTorchOptimizer method) (neuraltrain.optimizers.base.LightningOptimizer method) (neuraltrain.utils.CsvLoggerConfig method) (neuraltrain.utils.WandbLoggerConfig method) build_dataloader() (neuralset.dataloader.SegmentDataset method) C CACHE_TYPE (neuralset.base.Step attribute) (neuralset.events.study.Study attribute) caption (neuralset.events.etypes.Image attribute) catalog() (neuralset.events.study.Study class method) causal (neuraltrain.models.transformer.TransformerEncoder attribute) Chain channel_adapter_config (neuralbench.modules.DownstreamWrapper attribute) channel_mapping (neuraltrain.models.labram.NtLabram attribute) (neuraltrain.models.reve.NtReve attribute) channel_order (neuralset.extractors.neuro.MneRaw attribute) (neuralset.extractors.neuro.SpikesExtractor attribute) channel_positions (neuralbench.main.Data attribute) ChannelDropout (class in neuraltrain.models.common) chs_info_required (neuraltrain.models.labram.NtLabram attribute) (neuraltrain.models.reve.NtReve attribute) chunk_events() (in module neuralset.events.transforms.utils) clamp (neuralset.extractors.neuro.MneRaw attribute) (neuralset.extractors.neuro.SpikesExtractor attribute) (neuraltrain.models.preprocessor.OnTheFlyPreprocessor attribute) clean_text() (neuralbench.transforms.TextPreprocessor static method) cleaning (neuralset.extractors.neuro.FmriExtractor attribute) clip_duration (neuralset.extractors.video.HuggingFaceVideo attribute) ClipLoss (class in neuraltrain.losses.losses) code (neuralset.events.etypes.Action attribute) (neuralset.events.etypes.Stimulus attribute) col_name (neuralbench.transforms.PredefinedSplit attribute) collate_fn() (neuralset.dataloader.SegmentDataset method) collect_max_workers (neuralbench.main.BenchmarkAggregator attribute) column (neuralset.events.transforms.basic.CreateColumn attribute) (neuralset.events.transforms.basic.SelectIdx attribute) complex_out (neuraltrain.models.simpleconv.SimpleConv attribute) compute() (neuraltrain.metrics.metrics.GroupedMetric method) (neuraltrain.metrics.metrics.ImageSimilarity method) (neuraltrain.metrics.metrics.OnlinePearsonCorr method) (neuraltrain.metrics.metrics.Rank method) (neuraltrain.metrics.metrics.TopkAcc method) compute_class_weights (neuralbench.main.Experiment attribute) compute_class_weights_from_dataset() (in module neuralbench.utils) compute_clusters() (neuralset.events.transforms.splitting.SimilaritySplitter method) compute_heamo_response (neuralset.extractors.neuro.FnirsExtractor attribute) compute_optical_density (neuralset.extractors.neuro.FnirsExtractor attribute) compute_study_info() (in module neuralfetch.utils) cond_drop_prob (neuraltrain.models.diffusion_prior.DiffusionPrior attribute) configure_optimizers() (neuralbench.pl_module.BrainModule method) context (neuralset.events.etypes.BaseText attribute) contextualized (neuralset.extractors.text.HuggingFaceText attribute) conv_dropout (neuraltrain.models.simpleconv.SimpleConv attribute) conv_kernel_len (neuraltrain.models.freqbandnet.FreqBandNet attribute) conv_padding (neuraltrain.models.freqbandnet.FreqBandNet attribute) conv_pos_emb_kernel_size (neuraltrain.models.conv_transformer.ConvTransformer attribute) conv_stride (neuraltrain.models.freqbandnet.FreqBandNet attribute) (neuraltrain.models.green.Green attribute) convert_to_pydantic() (in module neuraltrain.utils) convolution_first (neuraltrain.models.conformer.Conformer attribute) ConvTransformerModel (class in neuraltrain.models.conv_transformer) copy() (neuralset.segments.Segment method) crop_first_last_wake() (neuralbench.transforms.CropSleepRecordings method) cross_attend (neuraltrain.models.transformer.TransformerEncoder attribute) csv_config (neuralbench.main.Experiment attribute) D data (neuralbench.main.Experiment attribute) (neuralset.dataloader.Batch attribute) data_shape (neuralset.events.study.StudyInfo attribute), [1] database (neuralfetch.download.Eegdash attribute) debug (neuralbench.main.BenchmarkAggregator attribute) default_event_fields (neuralbench.transforms.AddDefaultEvents attribute) default_event_type (neuralbench.transforms.AddDefaultEvents attribute) default_value (neuralset.events.transforms.basic.CreateColumn attribute) delete_checkpoints_on_exit (neuralbench.main.Experiment attribute) depth (neuraltrain.models.diffusion_prior.DiffusionPrior attribute) (neuraltrain.models.simpleconv.SimpleConv attribute) (neuraltrain.models.transformer.TransformerEncoder attribute) depthwise_conv_kernel_size (neuraltrain.models.conformer.Conformer attribute) description (neuralset.events.etypes.Action attribute) (neuralset.events.etypes.Stimulus attribute) (neuralset.events.study.Study attribute) DeterministicSplitter (class in neuralset.events.transforms.utils) devices (neuralbench.utils.TrainerConfig attribute) dilation_growth (neuraltrain.models.simpleconv.SimpleConv attribute) dilation_period (neuraltrain.models.simpleconv.SimpleConv attribute) dim (neuraltrain.models.conv_transformer.ConvTransformer attribute) (neuraltrain.utils.StandardScaler attribute) dim_head (neuraltrain.models.diffusion_prior.DiffusionPrior attribute) dir (neuraltrain.utils.WandbLoggerConfig attribute) distance_threshold (neuralset.extractors.neuro.FnirsExtractor attribute) doi (neuralfetch.download.Dryad attribute) download() (neuralfetch.download.BaseDownload method) (neuralset.events.study.Study method) (neuraltrain.utils.WandbInfra method) downstream_model_wrapper (neuralbench.main.Experiment attribute) DownstreamWrapperModel (class in neuralbench.modules) drop_bads (neuralset.extractors.neuro.MneRaw attribute) drop_incomplete (neuralset.dataloader.Segmenter attribute) drop_last (neuralbench.main.Data attribute) drop_unused_events (neuralset.dataloader.Segmenter attribute) dropout (neuraltrain.models.common.ChannelMerger attribute) (neuraltrain.models.common.Mlp attribute) (neuraltrain.models.conformer.Conformer attribute) (neuraltrain.models.green.Green attribute) (neuraltrain.models.simpleconv.SimpleConv attribute) (neuraltrain.models.simplerconv.SimplerConv attribute) dropout_around_channel (neuraltrain.models.common.ChannelMerger attribute) dropout_input (neuraltrain.models.simpleconv.SimpleConv attribute) dropout_rescale (neuraltrain.models.simpleconv.SimpleConv attribute) dset_dir (neuralfetch.download.BaseDownload attribute) dummy (neuralbench.main.Experiment attribute) DummyPredictorModel (class in neuraltrain.models.dummy_predictor) duration (neuralbench.main.Data attribute) (neuralset.dataloader.Segmenter attribute) (neuralset.events.etypes.Event attribute) (neuralset.extractors.meta.CroppedExtractor attribute) (neuralset.extractors.neuro.HrfConvolve attribute) E embed_ref (neuraltrain.models.common.ChannelMerger attribute) enable_progress_bar (neuralbench.utils.TrainerConfig attribute) encoder_config (neuraltrain.models.conv_transformer.ConvTransformer attribute) end_offset (neuralbench.transforms.OffsetEvents attribute) end_offset_from_start (neuralbench.transforms.OffsetEvents attribute) enhance_negative_correlation (neuralset.extractors.neuro.FnirsExtractor attribute) entity (neuraltrain.utils.WandbLoggerConfig attribute) eval_only (neuralbench.main.Experiment attribute) Event event_field (neuralset.extractors.base.EventField attribute) event_type (neuralbench.transforms.CropTimelines attribute) (neuralbench.transforms.PredefinedSplit attribute) (neuralset.events.transforms.text.AddConcatenationContext attribute) event_type_to_chunk (neuralset.events.transforms.chunking.ChunkEvents attribute) event_type_to_use (neuralset.events.transforms.chunking.ChunkEvents attribute) event_types (neuralset.events.transforms.basic.ConfigureEventLoader attribute) (neuralset.events.transforms.basic.RemoveMissing attribute) (neuralset.extractors.base.BaseExtractor attribute) (neuralset.extractors.base.EventDetector attribute) (neuralset.extractors.base.EventField attribute) (neuralset.extractors.base.Pulse attribute) (neuralset.extractors.meta.AggregatedExtractor attribute) (neuralset.extractors.meta.CroppedExtractor attribute) (neuralset.extractors.meta.ExtractorPCA attribute) (neuralset.extractors.meta.TimeAggregatedExtractor attribute) (neuralset.extractors.meta.ToStatic attribute) (neuralset.extractors.neuro.ChannelPositions attribute) (neuralset.extractors.neuro.EegExtractor attribute) (neuralset.extractors.neuro.EmgExtractor attribute) (neuralset.extractors.neuro.FmriExtractor attribute) (neuralset.extractors.neuro.FnirsExtractor attribute) (neuralset.extractors.neuro.HrfConvolve attribute) (neuralset.extractors.neuro.IeegExtractor attribute) (neuralset.extractors.neuro.MegExtractor attribute) (neuralset.extractors.neuro.MneRaw attribute) (neuralset.extractors.neuro.SpikesExtractor attribute) (neuralset.extractors.text.HuggingFaceText attribute) (neuralset.extractors.text.SentenceTransformer attribute) (neuralset.extractors.text.SonarEmbedding attribute) (neuralset.extractors.text.SpacyEmbedding attribute) (neuralset.extractors.text.TfidfEmbedding attribute) (neuralset.extractors.text.WordFrequency attribute) (neuralset.extractors.text.WordLength attribute) (neuralset.extractors.video.HuggingFaceVideo attribute) event_types_in_query (neuralset.events.study.StudyInfo attribute), [1] events (neuralset.segments.Segment property) EventsTransform excluded_patterns (neuralfetch.download.Openneuro attribute) experiment (neuraltrain.utils.WandbLoggerConfig attribute) experiments (neuralbench.main.BenchmarkAggregator attribute) extra (neuralset.events.etypes.Event attribute) Extractor extractor (neuralset.events.transforms.splitting.SimilaritySplitter attribute) (neuralset.extractors.meta.CroppedExtractor attribute) (neuralset.extractors.meta.ExtractorPCA attribute) (neuralset.extractors.meta.HuggingFacePCA attribute) (neuralset.extractors.meta.TimeAggregatedExtractor attribute) (neuralset.extractors.meta.ToStatic attribute) (neuralset.extractors.neuro.HrfConvolve attribute) extractor_aggregation (neuralset.extractors.meta.AggregatedExtractor attribute) extractors (neuralset.dataloader.Segmenter attribute) (neuralset.extractors.meta.AggregatedExtractor attribute) F factor (neuralset.extractors.neuro.ChannelPositions attribute) fast_dev_run (neuralbench.utils.TrainerConfig attribute) feature_extractor (neuralset.extractors.audio.HuggingFaceAudio property) ff_dropout (neuraltrain.models.transformer.TransformerEncoder attribute) ff_mult (neuraltrain.models.transformer.TransformerEncoder attribute) ffn_dim (neuraltrain.models.conformer.Conformer attribute) field (neuralset.events.transforms.basic.RemoveMissing attribute) filepath (neuralset.events.etypes.BaseDataEvent attribute) fill_non_finite (neuralset.extractors.neuro.MneRaw attribute) filter (neuralset.extractors.neuro.MneRaw attribute) filter_order (neuralset.extractors.audio.SpeechEnvelope attribute) fit() (neuralbench.main.Experiment method) (neuraltrain.utils.StandardScaler method) flat_out (neuraltrain.models.freqbandnet.FreqBandNet attribute) flush_logs_every_n_steps (neuraltrain.utils.CsvLoggerConfig attribute) fmri_spaces (neuralset.events.study.StudyInfo attribute), [1] FmriLinearModel (class in neuraltrain.models.fmri_mlp) FmriMlpModel (class in neuraltrain.models.fmri_mlp) folder (neuralfetch.download.BaseDownload attribute) folders (neuralfetch.download.Datalad attribute) forward() (neuralbench.modules.DownstreamWrapperModel method) (neuraltrain.augmentations.augmentations.BandstopFilterFFT method) (neuraltrain.augmentations.augmentations.TrivialBrainAugment method) (neuraltrain.losses.losses.ClipLoss method) (neuraltrain.losses.losses.MultiLoss method) (neuraltrain.losses.losses.SigLipLoss method) (neuraltrain.models.common.BahdanauAttention method) (neuraltrain.models.common.ChannelDropout method) (neuraltrain.models.common.LayerScale method) (neuraltrain.models.common.NormDenormScaler method) (neuraltrain.models.conv_transformer.ConvTransformerModel method) (neuraltrain.models.dummy_predictor.DummyPredictorModel method) (neuraltrain.models.fmri_mlp.FmriLinearModel method) (neuraltrain.models.fmri_mlp.FmriMlpModel method) (neuraltrain.models.freqbandnet.FreqBandNetModel method) (neuraltrain.models.linear.LinearModel method) (neuraltrain.models.preprocessor.OnTheFlyPreprocessorModel method) (neuraltrain.models.simpleconv.SimpleConvModel method) (neuraltrain.models.simpleconv.SimpleConvTimeAggModel method) (neuraltrain.models.simplerconv.SimplerConvModel method) fourier_emb_config (neuraltrain.models.common.ChannelMerger attribute) freq_lims_hz (neuraltrain.models.freqbandnet.FreqBandNet attribute) FreqBandNetModel (class in neuraltrain.models.freqbandnet) Frequency (class in neuralset.base) frequency (neuralset.events.etypes.BaseDataEvent attribute) (neuralset.events.study.StudyInfo attribute), [1] (neuralset.extractors.base.BaseExtractor attribute) (neuralset.extractors.base.BaseStatic attribute) (neuralset.extractors.base.EventDetector attribute) (neuralset.extractors.meta.AggregatedExtractor attribute) (neuralset.extractors.meta.CroppedExtractor attribute) (neuralset.extractors.meta.ToStatic attribute) (neuralset.extractors.neuro.FmriExtractor attribute) (neuralset.extractors.neuro.HrfConvolve attribute) (neuralset.extractors.neuro.MneRaw attribute) (neuralset.extractors.neuro.SpikesExtractor attribute) from_dict() (neuralset.events.etypes.Event class method) from_preproc (neuralset.extractors.neuro.FmriExtractor attribute) from_pretrained_name (neuraltrain.models.base.BaseBrainDecodeModel attribute), [1] from_space (neuralset.extractors.neuro.FmriExtractor attribute) fwhm (neuralset.extractors.neuro.FmriExtractor attribute) G gelu (neuraltrain.models.common.TemporalDownsampling attribute) (neuraltrain.models.simpleconv.SimpleConv attribute) get_config() (in module neuralbench.config_manager) get_embedding() (neuralset.extractors.text.SentenceTransformer method) (neuralset.extractors.text.SonarEmbedding method) (neuralset.extractors.text.SpacyEmbedding method) (neuralset.extractors.text.TfidfEmbedding method) (neuralset.extractors.text.WordFrequency method) (neuralset.extractors.text.WordLength method) get_probabilities() (neuraltrain.losses.losses.ClipLoss method) get_scores() (neuraltrain.losses.losses.ClipLoss method) (neuraltrain.losses.losses.SigLipLoss method) get_static() (neuralset.extractors.base.BaseStatic method) (neuralset.extractors.base.EventField method) (neuralset.extractors.base.LabelEncoder method) (neuralset.extractors.base.Pulse method) (neuralset.extractors.image.HuggingFaceImage method) (neuralset.extractors.meta.TimeAggregatedExtractor method) (neuralset.extractors.neuro.ChannelPositions method) get_success_file() (neuralfetch.download.BaseDownload method) glu (neuraltrain.models.simpleconv.SimpleConv attribute) glu_context (neuraltrain.models.simpleconv.SimpleConv attribute) glu_glu (neuraltrain.models.simpleconv.SimpleConv attribute) gradient_clip_val (neuralbench.utils.TrainerConfig attribute) group (neuraltrain.utils.WandbLoggerConfig attribute) groupby (neuralset.events.transforms.splitting.AssignKSplits attribute) GroupedMetric (class in neuraltrain.metrics.metrics) groups (neuraltrain.models.simpleconv.SimpleConv attribute) growth (neuraltrain.models.simpleconv.SimpleConv attribute) H heads (neuraltrain.models.transformer.TransformerEncoder attribute) hidden (neuraltrain.models.fmri_mlp.FmriMlp attribute) (neuraltrain.models.simpleconv.SimpleConv attribute) hidden_dim (neuraltrain.models.green.Green attribute) hidden_sizes (neuraltrain.models.common.Mlp attribute) hop_length (neuralset.extractors.audio.MelSpectrum attribute) host (neuraltrain.utils.WandbLoggerConfig attribute) I id (neuraltrain.utils.WandbLoggerConfig attribute) idx (neuralset.events.transforms.basic.SelectIdx attribute) image (neuralset.extractors.video.HuggingFaceVideo attribute) ImageSimilarity (class in neuraltrain.metrics.metrics) include (neuralfetch.download.Openneuro attribute) include_ref_eeg (neuralset.extractors.neuro.ChannelPositions attribute) infra (neuralbench.main.Experiment attribute) (neuralset.events.transforms.splitting.SklearnSplit attribute) (neuralset.extractors.image.HuggingFaceImage attribute) (neuralset.extractors.meta.ExtractorPCA attribute) (neuralset.extractors.neuro.ChannelPositions attribute) (neuralset.extractors.neuro.FmriExtractor attribute) (neuralset.extractors.neuro.HrfConvolve attribute) (neuralset.extractors.neuro.MneRaw attribute) (neuralset.extractors.neuro.SpikesExtractor attribute) (neuralset.extractors.text.HuggingFaceText attribute) (neuralset.extractors.video.HuggingFaceVideo attribute) (neuraltrain.utils.BaseExperiment attribute) infra_timelines (neuralset.events.study.Study attribute) init_id (neuraltrain.models.common.SubjectLayers attribute) initial_depth (neuraltrain.models.simpleconv.SimpleConv attribute) initial_linear (neuraltrain.models.simpleconv.SimpleConv attribute) initial_nonlin (neuraltrain.models.simpleconv.SimpleConv attribute) input_size (neuraltrain.models.common.Mlp attribute) interval (neuraltrain.optimizers.base.LightningOptimizer attribute) INVALID_VALUE (neuralset.extractors.neuro.ChannelPositions attribute) invalid_value (neuraltrain.models.common.ChannelMerger attribute) iter_timelines() (neuralset.events.study.Study method) K k (neuralset.events.transforms.splitting.AssignKSplits attribute) kernel_size (neuraltrain.models.common.TemporalDownsampling attribute) (neuraltrain.models.simpleconv.SimpleConv attribute) kernel_sizes (neuraltrain.models.simplerconv.SimplerConv attribute) kernel_width_s (neuraltrain.models.green.Green attribute) kwargs (neuraltrain.losses.base.BaseTorchLoss attribute) (neuraltrain.metrics.base.BaseTorchMetric attribute) (neuraltrain.models.base.BaseBrainDecodeModel attribute), [1] (neuraltrain.optimizers.base.BaseTorchLRScheduler attribute) (neuraltrain.optimizers.base.BaseTorchOptimizer attribute) L language (neuralset.events.etypes.BaseText attribute) (neuralset.extractors.text.SpacyEmbedding attribute) LANGUAGES (neuralset.extractors.text.SonarEmbedding attribute) (neuralset.extractors.text.WordFrequency attribute) layer (neuralset.extractors.audio.SonarAudio attribute) layer_dropout (neuraltrain.models.transformer.TransformerEncoder attribute) layer_norm (neuraltrain.models.common.TemporalDownsampling attribute) layer_norm_affine (neuraltrain.models.common.TemporalDownsampling attribute) layer_type (neuralset.extractors.audio.HuggingFaceAudio attribute) (neuralset.extractors.video.HuggingFaceVideo attribute) layers_to_freeze (neuralbench.modules.DownstreamWrapper attribute) layers_to_unfreeze (neuralbench.modules.DownstreamWrapper attribute) LayerScale (class in neuraltrain.models.common) layout_or_montage_name (neuralset.extractors.neuro.ChannelPositions attribute) licence (neuralset.events.study.Study attribute) lightning_optimizer_config (neuralbench.main.Experiment attribute) limit_train_batches (neuralbench.utils.TrainerConfig attribute) limit_val_batches (neuralbench.utils.TrainerConfig attribute) linear_out (neuraltrain.models.simpleconv.SimpleConv attribute) LinearModel (class in neuraltrain.models.linear) load_all() (neuralset.dataloader.SegmentDataset method) load_checkpoint() (in module neuralbench.utils) load_config() (in module neuralbench.config_manager) log_every_n_steps (neuralbench.utils.TrainerConfig attribute) log_model (neuraltrain.utils.WandbLoggerConfig attribute) log_name (neuraltrain.metrics.base.BaseMetric attribute) log_scale_eps (neuralset.extractors.audio.MelSpectrum attribute) logref (neuraltrain.models.green.Green attribute) loss (neuralbench.main.Experiment attribute) loss_to_metric_mapping (neuralbench.main.BenchmarkAggregator attribute) lowpass_freq (neuralset.extractors.audio.SpeechEnvelope attribute) lr (neuraltrain.optimizers.base.BaseTorchOptimizer attribute) M make_weighted_sampler() (in module neuralbench.utils) margin (neuraltrain.models.common.FourierEmb attribute) mask_filepath (neuralset.events.etypes.Fmri attribute) mask_len_samples (neuraltrain.augmentations.augmentations.SmoothTimeMaskConfig attribute) max_context_len (neuralset.events.transforms.splitting.AssignWordSplitAndContext attribute) (neuralset.events.transforms.text.AddConcatenationContext attribute) (neuralset.events.transforms.text.AddContextToWords attribute) max_delta_freq (neuraltrain.augmentations.augmentations.FrequencyShiftConfig attribute) max_duration (neuralset.events.transforms.chunking.ChunkEvents attribute) max_duration_s (neuralbench.transforms.CropTimelines attribute) max_features (neuralset.extractors.text.TfidfEmbedding attribute) max_imsize (neuralset.extractors.video.HuggingFaceVideo attribute) max_unmatched_ratio (neuralset.events.transforms.splitting.AssignSentenceSplit attribute) (neuralset.events.transforms.splitting.AssignWordSplitAndContext attribute) (neuralset.events.transforms.text.AddSentenceToWords attribute) max_wake_duration_min (neuralbench.transforms.CropSleepRecordings attribute) max_workers (neuralbench.main.BenchmarkAggregator attribute) merger_config (neuraltrain.models.simpleconv.SimpleConv attribute) (neuraltrain.models.simplerconv.SimplerConv attribute) metrics (neuralbench.main.Experiment attribute) min_duration (neuralset.events.transforms.chunking.ChunkEvents attribute) (neuralset.events.transforms.splitting.AssignSentenceSplit attribute) (neuralset.events.transforms.splitting.AssignWordSplitAndContext attribute) min_max_bandstop (neuraltrain.augmentations.augmentations.TrivialBrainAugmentConfig attribute) min_max_ch_drop (neuraltrain.augmentations.augmentations.TrivialBrainAugmentConfig attribute) min_max_freq_shift (neuraltrain.augmentations.augmentations.TrivialBrainAugmentConfig attribute) min_max_gauss_noise (neuraltrain.augmentations.augmentations.TrivialBrainAugmentConfig attribute) min_max_time_mask (neuraltrain.augmentations.augmentations.TrivialBrainAugmentConfig attribute) min_words (neuralset.events.transforms.splitting.AssignSentenceSplit attribute) (neuralset.events.transforms.splitting.AssignWordSplitAndContext attribute) mne_cpus (neuralset.extractors.neuro.MneRaw attribute) modality (neuralset.events.etypes.BaseText attribute) (neuralset.events.etypes.Stimulus attribute) mode (neuralbench.utils.TrainerConfig attribute) (neuralset.extractors.base.EventDetector attribute) (neuraltrain.models.common.SubjectLayers attribute) (neuraltrain.models.dummy_predictor.DummyPredictor attribute) model (neuralset.extractors.audio.HuggingFaceAudio property) (neuralset.extractors.audio.SonarAudio property) (neuralset.extractors.image.HuggingFaceImage property) (neuralset.extractors.text.HuggingFaceText property) (neuralset.extractors.text.SentenceTransformer property) (neuralset.extractors.text.SonarEmbedding property) model_forward_embedding() (neuralbench.pl_module.BrainModule method) model_name (neuralset.events.transforms.text.AddSummary attribute) (neuralset.extractors.audio.HuggingFaceAudio attribute) (neuralset.extractors.audio.SeamlessM4T attribute), [1] (neuralset.extractors.audio.Wav2Vec attribute) (neuralset.extractors.audio.Wav2VecBert attribute) (neuralset.extractors.audio.Whisper attribute), [1] (neuralset.extractors.image.HuggingFaceImage attribute) (neuralset.extractors.text.HuggingFaceText attribute) (neuralset.extractors.text.SentenceTransformer attribute) (neuralset.extractors.text.SpacyEmbedding attribute) model_output_key (neuralbench.modules.DownstreamWrapper attribute) monitor (neuralbench.utils.TrainerConfig attribute) MultiLoss (class in neuraltrain.losses.losses) N n_adapter_target_channels (neuralbench.modules.DownstreamWrapper property) n_blocks (neuraltrain.models.fmri_mlp.FmriMlp attribute) n_components (neuralset.extractors.meta.ExtractorPCA attribute) n_components_to_keep (neuralset.extractors.image.RFFT2D attribute) n_dims (neuraltrain.models.common.FourierEmb attribute) n_epochs (neuralbench.utils.TrainerConfig attribute) n_fft (neuralset.extractors.audio.MelSpectrum attribute) n_filters_conv (neuraltrain.models.freqbandnet.FreqBandNet attribute) n_freqs (neuraltrain.models.common.FourierEmb attribute) (neuraltrain.models.green.Green attribute) n_groups_concat (neuralset.extractors.meta.TimeAggregatedExtractor attribute) n_hidden_channels (neuraltrain.models.simplerconv.SimplerConv attribute) n_mels (neuralset.extractors.audio.MelSpectrum attribute) n_outputs (neuraltrain.models.freqbandnet.FreqBandNet attribute) n_repetition_times (neuraltrain.models.fmri_mlp.FmriMlp attribute) n_sentences_requested (neuralset.events.transforms.text.AddSummary attribute) n_spatial_dims (neuralset.extractors.neuro.ChannelPositions attribute) n_subjects (neuraltrain.models.common.ChannelMerger attribute) (neuraltrain.models.common.SubjectLayers attribute) n_time_groups (neuraltrain.models.simpleconv.SimpleConvTimeAgg attribute) n_virtual_channels (neuraltrain.models.common.ChannelMerger attribute) name (neuraltrain.utils.CsvLoggerConfig attribute) (neuraltrain.utils.WandbLoggerConfig attribute) needs_n_times (neuraltrain.models.labram.NtLabram attribute) (neuraltrain.models.reve.NtReve attribute) neuro (neuralbench.main.Data attribute) (neuralset.extractors.neuro.ChannelPositions attribute) neuro_device_types (neuraltrain.models.conv_transformer.ConvTransformer attribute) neuro_event_type (neuralbench.transforms.TextPreprocessor attribute) neuro_types() (neuralset.events.study.Study class method) norm_feats (neuralset.events.transforms.splitting.SimilaritySplitter attribute) norm_layer (neuraltrain.models.common.Mlp attribute) norm_type (neuraltrain.models.fmri_mlp.FmriMlp attribute) normalize (neuralset.extractors.neuro.ChannelPositions attribute) normalized (neuralset.extractors.audio.HuggingFaceAudio attribute) (neuralset.extractors.audio.MelSpectrum attribute) NormDenormScaler (class in neuraltrain.models.common) notch_filter (neuralset.extractors.neuro.MneRaw attribute) ns_events (neuralset.segments.Segment property) num_events_in_query (neuralset.events.study.StudyInfo attribute), [1] num_frames (neuralset.extractors.video.HuggingFaceVideo attribute) num_heads (neuraltrain.models.conformer.Conformer attribute) num_layers (neuraltrain.models.conformer.Conformer attribute) num_nodes (neuralbench.utils.TrainerConfig attribute) num_sanity_val_steps (neuralbench.utils.TrainerConfig attribute) num_subjects (neuralset.events.study.StudyInfo attribute), [1] num_timelines (neuralset.events.study.StudyInfo attribute), [1] num_workers (neuralbench.main.Data attribute) O oct_max (neuraltrain.models.green.Green attribute) oct_min (neuraltrain.models.green.Green attribute) offline (neuraltrain.utils.WandbLoggerConfig attribute) offset (neuralset.events.etypes.BaseSplittableEvent attribute) (neuralset.extractors.meta.CroppedExtractor attribute) (neuralset.extractors.neuro.FmriExtractor attribute) (neuralset.extractors.neuro.HrfConvolve attribute) (neuralset.extractors.neuro.MneRaw attribute) (neuralset.extractors.neuro.SpikesExtractor attribute) on_column_exists (neuralset.events.transforms.basic.CreateColumn attribute) on_test_batch_end() (neuralbench.callbacks.PlotRegressionVectors method) (neuralbench.callbacks.RecordingLevelEval method) (neuralbench.callbacks.TestFullRetrievalMetrics method) on_test_epoch_end() (neuralbench.callbacks.PlotConfusionMatrix method) (neuralbench.callbacks.PlotRegressionVectors method) (neuralbench.callbacks.RecordingLevelEval method) (neuralbench.callbacks.TestFullRetrievalMetrics method) on_test_epoch_start() (neuralbench.callbacks.PlotRegressionVectors method) (neuralbench.callbacks.RecordingLevelEval method) (neuralbench.callbacks.TestFullRetrievalMetrics method) on_the_fly_preprocessor (neuralbench.modules.DownstreamWrapper attribute) on_validation_batch_end() (neuralbench.callbacks.TestFullRetrievalMetrics method) on_validation_epoch_end() (neuralbench.callbacks.PlotConfusionMatrix method) (neuralbench.callbacks.TestFullRetrievalMetrics method) on_validation_epoch_start() (neuralbench.callbacks.TestFullRetrievalMetrics method) OnlinePearsonCorr (class in neuraltrain.metrics.metrics) OnTheFlyPreprocessorModel (class in neuraltrain.models.preprocessor) optimizer (neuraltrain.optimizers.base.LightningOptimizer attribute) org (neuralfetch.download.Huggingface attribute) orth_weights (neuraltrain.models.green.Green attribute) out_dim (neuraltrain.models.fmri_mlp.FmriLinear attribute) (neuraltrain.models.fmri_mlp.FmriMlp attribute) output_avg_pool (neuraltrain.models.conv_transformer.ConvTransformer attribute) output_dir (neuralbench.main.BenchmarkAggregator attribute) output_head_config (neuraltrain.models.fmri_mlp.FmriLinear attribute) (neuraltrain.models.fmri_mlp.FmriMlp attribute) (neuraltrain.models.simpleconv.SimpleConvTimeAgg attribute) output_layer_dim (neuraltrain.models.conv_transformer.ConvTransformer attribute) output_nonlin (neuraltrain.models.simplerconv.SimplerConv attribute) overlap() (neuralset.base.TimedArray method) override_sentences (neuralset.events.transforms.splitting.AssignWordSplitAndContext attribute) (neuralset.events.transforms.text.AddSentenceToWords attribute) overwrite (neuralset.events.transforms.audio.ExtractAudioFromVideo attribute) P p_drop (neuraltrain.augmentations.augmentations.ChannelsDropoutConfig attribute) padding (neuralset.dataloader.Segmenter attribute) (neuralset.extractors.neuro.FmriExtractor attribute) params (neuralset.events.transforms.basic.ConfigureEventLoader attribute) parent (neuralfetch.download.Donders attribute) partial_fit() (neuraltrain.utils.StandardScaler method) partial_pathlength_factor (neuralset.extractors.neuro.FnirsExtractor attribute) path (neuralset.events.study.Study attribute) patience (neuralbench.utils.TrainerConfig attribute) per_subject (neuraltrain.models.common.ChannelMerger attribute) persistent_workers (neuralbench.main.Data attribute) picks (neuralset.extractors.neuro.EegExtractor attribute) (neuralset.extractors.neuro.EmgExtractor attribute) (neuralset.extractors.neuro.FnirsExtractor attribute) (neuralset.extractors.neuro.IeegExtractor attribute) (neuralset.extractors.neuro.MegExtractor attribute) (neuralset.extractors.neuro.MneRaw attribute) pin_memory (neuralbench.main.Data attribute) pipeline (neuralset.events.transforms.text.AddSummary property) plot_confusion_matrix() (in module neuralbench.callbacks) PlotConfusionMatrix (class in neuralbench.callbacks) PlotRegressionVectors (class in neuralbench.callbacks) pool_kernel_len (neuraltrain.models.freqbandnet.FreqBandNet attribute) pool_layer (neuraltrain.models.green.Green attribute) post_skip (neuraltrain.models.simpleconv.SimpleConv attribute) pre_transformer_layer_norm (neuraltrain.models.conv_transformer.ConvTransformer attribute) precision (neuralbench.utils.TrainerConfig attribute) predefined_mapping (neuralset.extractors.base.LabelEncoder attribute) predict (neuraltrain.models.diffusion_prior.DiffusionPrior attribute) prefetch_factor (neuralbench.main.Data attribute) prefix (neuraltrain.utils.CsvLoggerConfig attribute) (neuraltrain.utils.WandbLoggerConfig attribute) prepare prepare() (neuralbench.main.BenchmarkAggregator method) (neuralbench.main.Data method) (neuralset.extractors.base.BaseExtractor method) (neuralset.extractors.base.EventField method) (neuralset.extractors.base.LabelEncoder method) (neuralset.extractors.meta.AggregatedExtractor method) (neuralset.extractors.meta.CroppedExtractor method) (neuralset.extractors.meta.ExtractorPCA method) (neuralset.extractors.meta.HuggingFacePCA method) (neuralset.extractors.meta.TimeAggregatedExtractor method) (neuralset.extractors.meta.ToStatic method) (neuralset.extractors.neuro.ChannelPositions method) (neuralset.extractors.neuro.FmriExtractor method) (neuralset.extractors.neuro.HrfConvolve method) (neuralset.extractors.neuro.MneRaw method) (neuralset.extractors.neuro.SpikesExtractor method) (neuralset.extractors.text.TfidfEmbedding method) prepare_pl_module() (neuralbench.main.Experiment method) preproc (neuralset.events.etypes.Fmri attribute) pretrained (neuralset.extractors.image.HuggingFaceImage attribute) (neuralset.extractors.text.HuggingFaceText attribute) pretrained_filename (neuraltrain.models.luna.NtLuna attribute) pretrained_weights_fname (neuralbench.main.Experiment attribute) prior_learned_query_mode (neuraltrain.models.diffusion_prior.DiffusionPrior attribute) probability (neuraltrain.augmentations.augmentations.ChannelsDropoutConfig attribute) (neuraltrain.augmentations.augmentations.FrequencyShiftConfig attribute) (neuraltrain.augmentations.augmentations.GaussianNoiseConfig attribute) (neuraltrain.augmentations.augmentations.SmoothTimeMaskConfig attribute) probe_config (neuralbench.modules.DownstreamWrapper attribute) project (neuraltrain.utils.WandbLoggerConfig attribute) projection (neuralset.extractors.neuro.FmriExtractor attribute) ptp_threshold (neuraltrain.models.preprocessor.OnTheFlyPreprocessor attribute) punctuation (neuralset.events.transforms.text.EnsureTexts attribute) Q query (neuralbench.transforms.OffsetEvents attribute) (neuralset.events.study.Study attribute) (neuralset.events.study.StudyInfo attribute), [1] (neuralset.events.transforms.basic.QueryEvents attribute) query_column_name (neuralset.events.transforms.basic.CreateColumn attribute) query_row (neuralset.events.transforms.basic.CreateColumn attribute) query_value (neuralset.events.transforms.basic.CreateColumn attribute) R random_f_init (neuraltrain.models.green.Green attribute) random_state (neuraltrain.models.dummy_predictor.DummyPredictor attribute) Rank (class in neuraltrain.metrics.metrics) ratios (neuralset.events.transforms.splitting.AssignSentenceSplit attribute) (neuralset.events.transforms.splitting.AssignWordSplitAndContext attribute) (neuralset.events.transforms.splitting.SimilaritySplitter attribute) read() (neuralset.events.etypes.BaseDataEvent method) read_mask() (neuralset.events.etypes.Fmri method) receptive_field (neuraltrain.models.simplerconv.SimplerConvModel property) record_id (neuralfetch.download.Zenodo attribute) RecordingLevelEval (class in neuralbench.callbacks) reduction (neuraltrain.models.linear.Linear attribute) reference (neuralset.extractors.neuro.IeegExtractor attribute) rel_pos_bias (neuraltrain.models.transformer.TransformerEncoder attribute) relu_leakiness (neuraltrain.models.simpleconv.SimpleConv attribute) repo_name (neuralfetch.download.Datalad property) repo_url (neuralfetch.download.Datalad attribute) requirements (neuralbench.transforms.AddDefaultEvents attribute) (neuralbench.transforms.CropSleepRecordings attribute) (neuralbench.transforms.CropTimelines attribute) (neuralbench.transforms.OffsetEvents attribute) (neuralbench.transforms.PredefinedSplit attribute) (neuralbench.transforms.SimilaritySplit attribute) (neuralbench.transforms.SklearnSplit attribute) (neuralbench.transforms.TextPreprocessor attribute) (neuralfetch.download.BaseDownload attribute) (neuralfetch.download.Dandi attribute) (neuralfetch.download.Datalad attribute) (neuralfetch.download.Donders attribute) (neuralfetch.download.Dryad attribute) (neuralfetch.download.Eegdash attribute) (neuralfetch.download.Figshare attribute) (neuralfetch.download.Huggingface attribute) (neuralfetch.download.Openneuro attribute) (neuralfetch.download.Osf attribute) (neuralfetch.download.Physionet attribute) (neuralfetch.download.Synapse attribute) (neuralfetch.download.Zenodo attribute) (neuralset.base.Chain attribute) (neuralset.base.Step attribute) (neuralset.events.etypes.Action attribute) (neuralset.events.etypes.Artifact attribute) (neuralset.events.etypes.Audio attribute) (neuralset.events.etypes.Background attribute) (neuralset.events.etypes.BaseDataEvent attribute) (neuralset.events.etypes.BaseSplittableEvent attribute) (neuralset.events.etypes.BaseText attribute) (neuralset.events.etypes.CategoricalEvent attribute) (neuralset.events.etypes.Eeg attribute) (neuralset.events.etypes.Emg attribute) (neuralset.events.etypes.Event attribute) (neuralset.events.etypes.EyeState attribute) (neuralset.events.etypes.Fmri attribute) (neuralset.events.etypes.Fnirs attribute) (neuralset.events.etypes.Ieeg attribute) (neuralset.events.etypes.Image attribute) (neuralset.events.etypes.Keystroke attribute) (neuralset.events.etypes.Meg attribute) (neuralset.events.etypes.MneRaw attribute) (neuralset.events.etypes.Phoneme attribute) (neuralset.events.etypes.Seizure attribute) (neuralset.events.etypes.Sentence attribute) (neuralset.events.etypes.SleepStage attribute) (neuralset.events.etypes.Spikes attribute) (neuralset.events.etypes.Stimulus attribute) (neuralset.events.etypes.Text attribute) (neuralset.events.etypes.Video attribute) (neuralset.events.etypes.Word attribute) (neuralset.events.study.Study attribute) (neuralset.events.transforms.audio.ExtractAudioFromVideo attribute) (neuralset.events.transforms.basic.AlignEvents attribute) (neuralset.events.transforms.basic.ConfigureEventLoader attribute) (neuralset.events.transforms.basic.CreateColumn attribute) (neuralset.events.transforms.basic.QueryEvents attribute) (neuralset.events.transforms.basic.RemoveMissing attribute) (neuralset.events.transforms.basic.SelectIdx attribute) (neuralset.events.transforms.chunking.ChunkEvents attribute) (neuralset.events.transforms.splitting.AssignKSplits attribute) (neuralset.events.transforms.splitting.AssignSentenceSplit attribute) (neuralset.events.transforms.splitting.AssignWordSplitAndContext attribute) (neuralset.events.transforms.splitting.SklearnSplit attribute) (neuralset.events.transforms.text.AddConcatenationContext attribute) (neuralset.events.transforms.text.AddContextToWords attribute) (neuralset.events.transforms.text.AddPartOfSpeech attribute) (neuralset.events.transforms.text.AddPhonemes attribute) (neuralset.events.transforms.text.AddSentenceToWords attribute) (neuralset.events.transforms.text.AddSummary attribute) (neuralset.events.transforms.text.EnsureTexts attribute) (neuralset.extractors.audio.HuggingFaceAudio attribute) (neuralset.extractors.audio.MelSpectrum attribute) (neuralset.extractors.audio.SeamlessM4T attribute) (neuralset.extractors.audio.SonarAudio attribute) (neuralset.extractors.audio.SpeechEnvelope attribute) (neuralset.extractors.audio.Wav2Vec attribute) (neuralset.extractors.audio.Wav2VecBert attribute) (neuralset.extractors.audio.Whisper attribute) (neuralset.extractors.base.BaseExtractor attribute) (neuralset.extractors.base.BaseStatic attribute) (neuralset.extractors.base.EventDetector attribute) (neuralset.extractors.base.EventField attribute) (neuralset.extractors.base.LabelEncoder attribute) (neuralset.extractors.base.Pulse attribute) (neuralset.extractors.image.ColorHistogram attribute) (neuralset.extractors.image.HOG attribute) (neuralset.extractors.image.HuggingFaceImage attribute) (neuralset.extractors.image.LBP attribute) (neuralset.extractors.image.RFFT2D attribute) (neuralset.extractors.meta.AggregatedExtractor attribute) (neuralset.extractors.meta.CroppedExtractor attribute) (neuralset.extractors.meta.ExtractorPCA attribute) (neuralset.extractors.meta.HuggingFacePCA attribute) (neuralset.extractors.meta.TimeAggregatedExtractor attribute) (neuralset.extractors.meta.ToStatic attribute) (neuralset.extractors.neuro.ChannelPositions attribute) (neuralset.extractors.neuro.EegExtractor attribute) (neuralset.extractors.neuro.EmgExtractor attribute) (neuralset.extractors.neuro.FmriExtractor attribute) (neuralset.extractors.neuro.FnirsExtractor attribute) (neuralset.extractors.neuro.HrfConvolve attribute) (neuralset.extractors.neuro.IeegExtractor attribute) (neuralset.extractors.neuro.MegExtractor attribute) (neuralset.extractors.neuro.MneRaw attribute) (neuralset.extractors.neuro.SpikesExtractor attribute) (neuralset.extractors.text.HuggingFaceText attribute) (neuralset.extractors.text.SentenceTransformer attribute) (neuralset.extractors.text.SonarEmbedding attribute) (neuralset.extractors.text.SpacyEmbedding attribute) (neuralset.extractors.text.TfidfEmbedding attribute) (neuralset.extractors.text.WordFrequency attribute) (neuralset.extractors.text.WordLength attribute) (neuralset.extractors.video.HuggingFaceVideo attribute) reset() (neuraltrain.metrics.metrics.GroupedMetric method) (neuraltrain.metrics.metrics.OnlinePearsonCorr method) residual_attn (neuraltrain.models.transformer.TransformerEncoder attribute) resume (neuraltrain.utils.WandbLoggerConfig attribute) return_angle (neuralset.extractors.image.RFFT2D attribute) return_log_psd (neuralset.extractors.image.RFFT2D attribute) return_one_hot (neuralset.extractors.base.LabelEncoder attribute) rewrite (neuraltrain.models.simpleconv.SimpleConv attribute) root_study_folder() (in module neuralfetch.utils) rotary_pos_emb (neuraltrain.models.transformer.TransformerEncoder attribute) rotary_xpos (neuraltrain.models.transformer.TransformerEncoder attribute) run (neuralbench.main.Experiment property) run() (neuralbench.main.BenchmarkAggregator method) (neuraltrain.utils.BaseExperiment method) run_benchmark() (in module neuralbench.cli) run_benchmark_cli() (in module neuralbench.cli) run_grid() (in module neuraltrain.utils) S sampling_rate (neuralset.extractors.audio.SonarAudio attribute) scale (neuraltrain.models.simpleconv.SimpleConv attribute) scale_dim (neuraltrain.models.preprocessor.OnTheFlyPreprocessor attribute) scale_factor (neuralset.extractors.neuro.MneRaw attribute) (neuralset.extractors.neuro.SpikesExtractor attribute) scale_residual (neuraltrain.models.transformer.TransformerEncoder attribute) scaler (neuralset.extractors.neuro.MneRaw attribute) (neuralset.extractors.neuro.SpikesExtractor attribute) (neuraltrain.models.preprocessor.OnTheFlyPreprocessor attribute) scaler_quantile (neuraltrain.models.preprocessor.OnTheFlyPreprocessor attribute) scalp_coupling_index_threshold (neuralset.extractors.neuro.FnirsExtractor attribute) scheduler (neuraltrain.optimizers.base.LightningOptimizer attribute) seed (neuralbench.main.Experiment attribute) (neuralset.events.transforms.splitting.AssignSentenceSplit attribute) (neuralset.events.transforms.splitting.AssignWordSplitAndContext attribute) Segment (class in neuralset.segments) SegmentDataset (class in neuralset.dataloader) Segmenter segments (neuralset.dataloader.Batch attribute) sentence (neuralset.events.etypes.Keystroke attribute) (neuralset.events.etypes.Phoneme attribute) (neuralset.events.etypes.Word attribute) sentence_char (neuralset.events.etypes.Word attribute) sentence_only (neuralset.events.transforms.splitting.AssignWordSplitAndContext attribute) (neuralset.events.transforms.text.AddConcatenationContext attribute) (neuralset.events.transforms.text.AddContextToWords attribute) setup() (neuralbench.callbacks.RecordingLevelEval method) (neuralbench.callbacks.TestFullRetrievalMetrics method) setup_config() (in module neuralbench.config_manager) setup_run() (neuralbench.main.Experiment method) setup_trainer() (neuralbench.main.Experiment method) setup_wandb_logger() (neuralbench.main.Experiment method) sfreq (neuraltrain.augmentations.augmentations.BandstopFilterFFTConfig attribute) (neuraltrain.augmentations.augmentations.FrequencyShiftConfig attribute) (neuraltrain.augmentations.augmentations.TrivialBrainAugmentConfig attribute) (neuraltrain.models.freqbandnet.FreqBandNet attribute) (neuraltrain.models.green.Green attribute) shrinkage_init (neuraltrain.models.green.Green attribute) SigLipLoss (class in neuraltrain.losses.losses) SimpleConvModel (class in neuraltrain.models.simpleconv) SimpleConvTimeAggModel (class in neuraltrain.models.simpleconv) SimplerConvModel (class in neuraltrain.models.simplerconv) skip (neuraltrain.models.simpleconv.SimpleConv attribute) space (neuralset.events.etypes.Fmri attribute) spec (neuralset.events.etypes.Fmri attribute) SpecialLoader (class in neuralset.events.study) specs() (neuralset.events.study.SpecialLoader method) specs_json() (neuralset.events.study.SpecialLoader method) split_by (neuralbench.transforms.SklearnSplit attribute) (neuralset.events.transforms.splitting.SklearnSplit attribute) split_field (neuralset.events.transforms.splitting.AssignWordSplitAndContext attribute) (neuralset.events.transforms.text.AddConcatenationContext attribute) (neuralset.events.transforms.text.AddContextToWords attribute) stage (neuralset.events.etypes.SleepStage attribute) start (neuralbench.main.Data attribute) (neuralset.dataloader.Segmenter attribute) (neuralset.events.etypes.Event attribute) start_offset (neuralbench.transforms.OffsetEvents attribute) start_offset_from_end (neuralbench.transforms.OffsetEvents attribute) start_offset_s (neuralbench.transforms.CropTimelines attribute) state (neuralset.events.etypes.Artifact attribute) (neuralset.events.etypes.EyeState attribute) (neuralset.events.etypes.Seizure attribute) std (neuraltrain.augmentations.augmentations.GaussianNoiseConfig attribute) Step steps (neuralset.base.Chain attribute) stim_event_type (neuralbench.transforms.SimilaritySplit attribute) stop (neuralset.events.etypes.Event property) (neuralset.segments.Segment property) storage_inds (neuralfetch.download.Osf attribute) strategy (neuralbench.utils.TrainerConfig attribute) stratify_by (neuralbench.transforms.SklearnSplit attribute) (neuralset.events.transforms.splitting.SklearnSplit attribute) strict_matching (neuralbench.modules.DownstreamWrapper attribute) stride (neuralbench.main.Data attribute) (neuralset.dataloader.Segmenter attribute) (neuraltrain.models.common.TemporalDownsampling attribute) stride_drop_incomplete (neuralbench.main.Data attribute) (neuralset.dataloader.Segmenter attribute) strides (neuraltrain.models.simplerconv.SimplerConv attribute) Study study (neuralbench.main.Data attribute) (neuralfetch.download.BaseDownload attribute) study_id (neuralfetch.download.Donders attribute) (neuralfetch.download.Synapse attribute) study_relative_path() (neuralset.events.etypes.BaseDataEvent method) study_summary() (neuralset.events.study.Study method) subject (neuralset.events.etypes.Fmri attribute) (neuralset.events.etypes.MneRaw attribute) (neuralset.events.etypes.Spikes attribute) subject_dropout (neuraltrain.models.common.SubjectLayers attribute) subject_layers_config (neuraltrain.models.fmri_mlp.FmriMlp attribute) (neuraltrain.models.linear.Linear attribute) (neuraltrain.models.simpleconv.SimpleConv attribute) (neuraltrain.models.simplerconv.SimplerConv attribute) subject_layers_dim (neuraltrain.models.fmri_mlp.FmriMlp attribute) (neuraltrain.models.simpleconv.SimpleConv attribute) summarize() (neuralset.events.transforms.text.AddSummary method) summary_columns (neuralbench.main.Data attribute) T target (neuralbench.main.Data attribute) target_event_type (neuralbench.transforms.AddDefaultEvents attribute) target_scaler (neuralbench.main.Experiment attribute) task_name (neuralbench.main.Experiment attribute) temporal_downsampling_config (neuraltrain.models.conv_transformer.ConvTransformer attribute) test_full_metrics (neuralbench.main.Experiment attribute) test_full_retrieval_metrics (neuralbench.main.Experiment attribute) test_random_state (neuralbench.transforms.PredefinedSplit attribute) (neuralbench.transforms.SimilaritySplit attribute) (neuralbench.transforms.SklearnSplit attribute) (neuralset.events.transforms.splitting.SklearnSplit attribute) test_split_query (neuralbench.transforms.PredefinedSplit attribute) test_split_ratio (neuralbench.transforms.SimilaritySplit attribute) (neuralbench.transforms.SklearnSplit attribute) (neuralset.events.transforms.splitting.SklearnSplit attribute) test_step() (neuralbench.pl_module.BrainModule method) TestFullRetrievalMetrics (class in neuralbench.callbacks) text (neuralset.events.etypes.BaseText attribute) threads (neuralfetch.download.Datalad attribute) threshold (neuralbench.transforms.SimilaritySplit attribute) (neuralset.events.transforms.splitting.SimilaritySplitter attribute) time_agg (neuraltrain.models.fmri_mlp.FmriLinear attribute) (neuraltrain.models.fmri_mlp.FmriMlp attribute) time_agg_out (neuraltrain.models.simpleconv.SimpleConvTimeAgg attribute) time_aggregation (neuralset.extractors.meta.TimeAggregatedExtractor attribute) TimedArray (class in neuralset.base) TimedIterator (class in neuraltrain.utils) Timeline timeline (neuralset.events.etypes.Event attribute) timesteps (neuraltrain.models.diffusion_prior.DiffusionPrior attribute) to() (neuralset.dataloader.Batch method) to_dict() (neuralset.events.etypes.Event method) to_ind() (neuralset.base.Frequency method) to_sec() (neuralset.base.Frequency method) token (neuralfetch.download.Dryad attribute) tokenizer (neuralset.extractors.text.HuggingFaceText property) TopkAcc (class in neuraltrain.metrics.metrics) TopkAccFromScores (class in neuraltrain.metrics.metrics) total_dim (neuraltrain.models.common.FourierEmb attribute) tr_embed_dim (neuraltrain.models.fmri_mlp.FmriMlp attribute) trainer_config (neuralbench.main.Experiment attribute) training_step() (neuralbench.pl_module.BrainModule method) transform() (neuralset.events.transforms.splitting.AssignWordSplitAndContext method) (neuraltrain.utils.StandardScaler method) transformer_config (neuraltrain.models.conv_transformer.ConvTransformer attribute) (neuraltrain.models.simpleconv.SimpleConv attribute) treat_missing_as_separate_class (neuralset.extractors.base.LabelEncoder attribute) Trigger trigger (neuralset.segments.Segment property) trigger_event_type (neuralbench.main.Data attribute) trigger_field (neuralset.events.transforms.basic.AlignEvents attribute) trigger_query (neuralset.dataloader.Segmenter attribute) trigger_type (neuralset.events.transforms.basic.AlignEvents attribute) TrivialBrainAugment (class in neuraltrain.augmentations.augmentations) type (neuralset.events.etypes.Action attribute) (neuralset.events.etypes.Artifact attribute) (neuralset.events.etypes.Audio attribute) (neuralset.events.etypes.Background attribute) (neuralset.events.etypes.BaseDataEvent attribute) (neuralset.events.etypes.BaseSplittableEvent attribute) (neuralset.events.etypes.BaseText attribute) (neuralset.events.etypes.CategoricalEvent attribute) (neuralset.events.etypes.Eeg attribute) (neuralset.events.etypes.Emg attribute) (neuralset.events.etypes.Event attribute) (neuralset.events.etypes.EyeState attribute) (neuralset.events.etypes.Fmri attribute) (neuralset.events.etypes.Fnirs attribute) (neuralset.events.etypes.Ieeg attribute) (neuralset.events.etypes.Image attribute) (neuralset.events.etypes.Keystroke attribute) (neuralset.events.etypes.Meg attribute) (neuralset.events.etypes.MneRaw attribute) (neuralset.events.etypes.Phoneme attribute) (neuralset.events.etypes.Seizure attribute) (neuralset.events.etypes.Sentence attribute) (neuralset.events.etypes.SleepStage attribute) (neuralset.events.etypes.Spikes attribute) (neuralset.events.etypes.Stimulus attribute) (neuralset.events.etypes.Text attribute) (neuralset.events.etypes.Video attribute) (neuralset.events.etypes.Word attribute) types_to_align (neuralset.events.transforms.basic.AlignEvents attribute) U unmerge (neuraltrain.models.common.ChannelMerger attribute) update() (neuraltrain.metrics.metrics.GroupedMetric method) (neuraltrain.metrics.metrics.ImageSimilarity method) (neuraltrain.metrics.metrics.OnlinePearsonCorr method) (neuraltrain.metrics.metrics.Rank method) (neuraltrain.metrics.metrics.TopkAccFromScores method) update_ch_pos (neuraltrain.models.preprocessor.OnTheFlyPreprocessor attribute) update_source_info() (in module neuralfetch.utils) url (neuralset.events.study.Study attribute) usage_penalty (neuraltrain.models.common.ChannelMerger attribute) use_age (neuraltrain.models.green.Green attribute) use_audio (neuralset.extractors.video.HuggingFaceVideo attribute) use_group_norm (neuraltrain.models.conformer.Conformer attribute) use_log_scale (neuralset.extractors.audio.MelSpectrum attribute) use_rmsnorm (neuraltrain.models.transformer.TransformerEncoder attribute) use_scalenorm (neuraltrain.models.transformer.TransformerEncoder attribute) use_sklearn_split (neuralbench.transforms.SimilaritySplit attribute) use_tmp_cache (neuralset.extractors.meta.HuggingFacePCA attribute) use_tr_embeds (neuraltrain.models.fmri_mlp.FmriMlp attribute) use_tr_layer (neuraltrain.models.fmri_mlp.FmriMlp attribute) use_weighted_sampler (neuralbench.main.Data attribute) V valid_random_state (neuralbench.transforms.PredefinedSplit attribute) (neuralbench.transforms.SimilaritySplit attribute) (neuralbench.transforms.SklearnSplit attribute) (neuralset.events.transforms.splitting.SklearnSplit attribute) valid_split_by (neuralbench.transforms.PredefinedSplit attribute) valid_split_ratio (neuralbench.transforms.PredefinedSplit attribute) (neuralbench.transforms.SimilaritySplit attribute) (neuralbench.transforms.SklearnSplit attribute) (neuralset.events.transforms.splitting.SklearnSplit attribute) validate_before_training (neuralbench.main.Experiment attribute) validation_step() (neuralbench.pl_module.BrainModule method) vectorizer (neuralset.extractors.text.TfidfEmbedding property) version (neuralfetch.download.Dandi attribute) (neuralfetch.download.Physionet attribute) (neuraltrain.utils.CsvLoggerConfig attribute) W wandb_config (neuralbench.main.Experiment attribute) (neuraltrain.utils.WandbInfra attribute) whiten (neuralset.extractors.meta.ExtractorPCA attribute) with_start() (neuralset.base.TimedArray method)